Extraction of plant genomic DNA using a centrifuge

First, the material

Young leaves.

Second, the equipment

Pipette, frozen high speed centrifuge, bench top high speed centrifuge, water bath, ceramic mortar, 50 ml centrifuge tube (with lid) and 5 ml and 1.5 ml centrifuge tubes, bent into small hooks.

Third, the reagent

1. Extraction buffer I: 100 mmol/LTris·Cl, pH 8.0, 20 mmol/L EDTA, 500 mmol/L NaCl, 1.5% SDS.

2. Extraction buffer II: 18.6 g of glucose, 6.9 g of sodium diethyldithiocarbonate, 6.0 g of PVP, 240 ul of mercaptoethanol, and water to 300 ml.

3, 80:4:16/chloroform: pentanol: ethanol

4, RnaseA mother liquor

5. Other reagents: liquid nitrogen, isopropanol, TE buffer, absolute ethanol, 70% ethanol, 3 mol/L NaAc.

Fourth, the operation steps:

1. Add 20 ml of extraction buffer I to a 50 ml centrifuge tube and preheat in a 60 °C water bath.

2. 5-10g of seedlings or leaves, cut into pieces, add liquid nitrogen into powder in the mortar, immediately pour into preheated centrifuge tube, shake vigorously and mix, heat in 60 °C water bath for 30-60 minutes (long time) , DNA yield is high), shaking from time to time.

3. Add 20ml chloroform / pentanol / ethanol solution, mix by inversion (with gloves, to prevent damage to the skin), let stand for 5-10 minutes at room temperature, layer the aqueous and organic phases (remix if necessary) .

4. Centrifuge at 5000 rpm for 5 minutes at room temperature.

5. Carefully remove the supernatant into another 50 ml centrifuge tube, add 1 volume of isopropanol, mix, and leave the flocculent DNA precipitate for a while at room temperature.

6. Add 1 ml of TE to 1.5 ml eppendorf. The DNA floc was taken out with a hook-shaped glass rod, blotted dry on a clean absorbent paper, transferred to a centrifuge tube containing TE, and the DNA was quickly dissolved in TE.

7. If the DNA does not form a flocculent precipitate, it can be centrifuged for 5 minutes at 5000 rpm and the pellet is transferred to the TE tube. The precipitate thus collected is often difficult to dissolve in TE and can be placed in a water bath at 60 ° C for more than 15 minutes to aid dissolution.

8. Centrifuge the DNA solution at 3000 rpm for 5 minutes and pour the supernatant into a clean 5 ml centrifuge tube.

9. Add 5 μl of RNaseA (10 μg/μl) and remove the RNA at 37 ° C for 10 minutes (RNA has no effect on DNA manipulation and analysis, and this step can be omitted).

10. Add 1/10 volume of 3mol/L NaAc and 2× volume of ice ethanol, mix and store at -20 °C for about 20 minutes, and the DNA will form a flocculent precipitate.

11. Use a glass rod to remove the DNA pellet, rinse with 70% ethanol, and blot dry on clean absorbent paper.

12. Re-dissolve the DNA in 1 ml TE, -20 storage.

13. 2 μl of DNA sample was electrophoresed on 0.7% Agarose gel to determine the molecular size of the DNA. At the same time, 15 μl was diluted 20 times, OD260/OD280 was measured, and DNA content and quality were measured.

[Note] 5g sample can guarantee 500μg DNA, which is sufficient for RFLP, PCR and other analysis.

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